Transcript: lnc-OXGR1-8:3

Basic information

LNCipedia transcript ID: lnc-OXGR1-8:3 
LNCipedia gene ID: lnc-OXGR1-8
Location (hg19): chr13:97593535-97600517
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 789 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000442322.1; LINC00359-001; OTTHUMT00000045520.1; NONHSAT034787
Alternative gene names: ENSG00000243300.1; LINC00359; OTTHUMG00000017235.1; ENSG00000243300.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.5442 non-coding 
CPAT coding probability 3.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OXGR1-8:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OXGR1-1:1
4.0 LINC00359:3
4.1 LINC00359:3
5.0 LINC00359:3
5.1 lnc-IRS2-69:3
5.2 lnc-OXGR1-8:3