Transcript: lnc-PABPC4L-8:1

Basic information

LNCipedia transcript ID: lnc-PABPC4L-8:1 
LNCipedia gene ID: lnc-PABPC4L-8
Ensembl Gene ID: ENSG00000251388
Ensembl Transcript ID: ENST00000507844
Location (hg19): chr4:134792401-134931845
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 619 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007836; ENST00000507844; ENST00000507844.1; RP11-427M20.1-001; OTTHUMT00000364397.1; NONHSAT098353
Alternative gene names: XLOC_004083; linc-SCLT1-2; ENSG00000251388; RP11-427M20.1; ENSG00000251388.1; OTTHUMG00000161291.1; AC079380.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.4949 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PABPC4L-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-62N21.1.1-8:1
3.1 lnc-RP11-62N21.1.1-8:1
4.0 lnc-RP11-62N21.1.1-8:1
4.1 lnc-RP11-62N21.1.1-8:1
5.0 lnc-RP11-62N21.1.1-8:1
5.1 lnc-CLGN-56:1
5.2 lnc-PABPC4L-8:1