Transcript: lnc-PACRGL-5:1

Basic information

LNCipedia transcript ID: lnc-PACRGL-5:1 
LNCipedia gene ID: lnc-PACRGL-5
Location (hg19): chr4:21950638-22331953
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1893 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000510705.2; RP11-17E2.2-001; OTTHUMT00000367308.3; NONHSAT095750
Alternative gene names: ENSG00000250039.2; RP11-17E2.2; OTTHUMG00000162099.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.4946 non-coding 
CPAT coding probability 6.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PACRGL-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PACRGL-5:1
4.0 lnc-PACRGL-5:1
4.1 lnc-PACRGL-5:1
5.0 lnc-PACRGL-5:1
5.1 lnc-USP17L28-80:1
5.2 lnc-PACRGL-5:1