Transcript: lnc-PADI1-1:3

Basic information

LNCipedia transcript ID: lnc-PADI1-1:3 
LNCipedia gene ID: lnc-PADI1-1
Ensembl Gene ID: ENSG00000204362
Ensembl Transcript ID: ENST00000634972
Location (hg19): chr1:17516284-17522882
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 590 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000634972.1
Alternative gene names: ENSG00000204362.6; RP11-380J14.1; AL590644.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -153.703 non-coding 
CPAT coding probability 13.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PADI1-1:3 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PADI1-1:3
4.1 lnc-PADI1-1:3
5.0 lnc-PADI1-1:3
5.1 lnc-SZRD1-47:7
5.2 lnc-PADI1-1:3