Transcript: lnc-PADI6-3:1

Basic information

LNCipedia transcript ID: lnc-PADI6-3:1 
LNCipedia gene ID: lnc-PADI6-3
Location (hg19): chr1:17766345-17776121
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 9777 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000034711.1|ENCT00000002194.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 20.8905 non-coding 
CPAT coding probability 2.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PADI6-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PADI4-3:2
5.0 lnc-PADI4-3:2
5.1 lnc-SZRD1-59:1
5.2 lnc-PADI6-3:1