Transcript: lnc-PAFAH1B1-2:4

Basic information

LNCipedia transcript ID: lnc-PAFAH1B1-2:4 
LNCipedia gene ID: lnc-PAFAH1B1-2
Location (hg19): chr17:2615276-2616523
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1166 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT144985
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.6769 non-coding 
CPAT coding probability 49.42% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PAFAH1B1-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAFAH1B1-2:4
4.0 lnc-PAFAH1B1-2:4
4.1 lnc-PAFAH1B1-2:4
5.0 lnc-PAFAH1B1-2:4
5.1 lnc-RPA1-41:2
5.2 lnc-PAFAH1B1-2:4