Transcript: lnc-PAICS-3:2

Basic information

LNCipedia transcript ID: lnc-PAICS-3:2 
LNCipedia gene ID: lnc-PAICS-3
Ensembl Gene ID: ENSG00000269921
Ensembl Transcript ID: ENST00000602927
Location (hg19): chr4:57253791-57254319
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 529 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT147285; ENST00000602927.1
Alternative gene names: ENSG00000269921.1; RP11-646I6.5; AC068620.2; AC068620.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.9283 non-coding 
CPAT coding probability 1.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAICS-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAICS-3:2
4.0 lnc-PAICS-3:2
4.1 lnc-PAICS-3:2
5.0 lnc-PAICS-3:2
5.1 lnc-CEP135-9:8
5.2 lnc-PAICS-3:2