Transcript: lnc-PAIP2-4:1

Basic information

LNCipedia transcript ID: lnc-PAIP2-4:1 
LNCipedia gene ID: lnc-PAIP2-4
Location (hg19): chr5:138741031-138741377
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 347 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: predAs_chen_AV743388_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.8622 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAIP2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAIP2-4:1
4.0 lnc-PAIP2-4:1
4.1 lnc-PAIP2-4:1
5.0 lnc-PAIP2-4:1
5.1 lnc-EIF4EBP3-30:1
5.2 lnc-PAIP2-4:1