Transcript: lnc-PAM-1:10

Basic information

LNCipedia transcript ID: lnc-PAM-1:10 
LNCipedia gene ID: lnc-PAM-1
Location (hg19): chr5:102143767-102201896
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 539 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT103047
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -31.1535 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PAM-1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPIP5K2-1:6
4.0 lnc-PAM-1:10
4.1 lnc-PAM-1:10
5.0 lnc-PAM-1:10
5.1 lnc-GPR150-109:6
5.2 lnc-PAM-1:10