Transcript: lnc-PAM-2:1

Basic information

LNCipedia transcript ID: lnc-PAM-2:1 
LNCipedia gene ID: lnc-PAM-2
Ensembl Gene ID: ENSG00000247402
Ensembl Transcript ID: ENST00000501405
Location (hg19): chr5:101941339-101941901
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 391 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009476; ENST00000501405; ENST00000501405.2; CTD-2340E1.2-001; OTTHUMT00000370370.1; NONHSAT103031
Alternative gene names: XLOC_004494; linc-PAM-2; ENSG00000247402; CTD-2340E1.2; ENSG00000247402.2; OTTHUMG00000162774.1; AC099487.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.7358 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAM-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAM-2:1
3.1 lnc-PAM-2:1
4.0 lnc-PAM-2:1
4.1 lnc-PAM-2:1
5.0 lnc-PAM-2:1
5.1 lnc-GPR150-102:1
5.2 lnc-PAM-2:1