Transcript: lnc-PAM16-8:1

Basic information

LNCipedia transcript ID: lnc-PAM16-8:1 
LNCipedia gene ID: lnc-PAM16-8
Location (hg19): chr16:4362564-4365539
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2976 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000028552.1|ENCT00000163231.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.7219 non-coding 
CPAT coding probability 8.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAM16-8:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PAM16-8:1
5.0 lnc-PAM16-8:1
5.1 lnc-SEPT12-37:1
5.2 lnc-PAM16-8:1