Transcript: lnc-PANK3-20:1

Basic information

LNCipedia transcript ID: lnc-PANK3-20:1 
LNCipedia gene ID: lnc-PANK3-20
Location (hg19): chr5:166205336-166267544
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 327 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_3053_chr5:166205335-166267544_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -305.194 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PANK3-20:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PANK3-20:1
4.0 lnc-PANK3-20:1
4.1 lnc-PANK3-20:1
5.0 lnc-PANK3-20:1
5.1 lnc-FAM71B-56:1
5.2 lnc-PANK3-20:1