Transcript: lnc-PANK3-3:1

Basic information

LNCipedia transcript ID: lnc-PANK3-3:1 
LNCipedia gene ID: lnc-PANK3-3
Ensembl Gene ID: ENSG00000253925
Ensembl Transcript ID: ENST00000517408
Location (hg19): chr5:167512334-167614724
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2181 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517408.1; CTB-178M22.1-001; OTTHUMT00000371197.1; NONHSAT104980
Alternative gene names: ENSG00000253925.1; CTB-178M22.1; OTTHUMG00000162967.1; AC011369.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.5412 non-coding 
CPAT coding probability 3.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PANK3-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PANK3-3:1
4.0 lnc-PANK3-3:1
4.1 lnc-PANK3-3:1
5.0 lnc-PANK3-3:1
5.1 lnc-PDLIM7-128:1
5.2 lnc-PANK3-3:1