Transcript: lnc-PAPD7-2:5

Basic information

LNCipedia transcript ID: lnc-PAPD7-2:5 
LNCipedia gene ID: lnc-PAPD7-2
Ensembl Gene ID: ENSG00000251365
Ensembl Transcript ID: ENST00000506093
Location (hg19): chr5:6766004-6772066
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 596 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009339; ENST00000506093; ENST00000506093.1; RP11-332J15.3-001; OTTHUMT00000365835.1; NONHSAT100218
Alternative gene names: XLOC_004272; linc-ADCY2-9; ENSG00000251365; RP11-332J15.3; ENSG00000251365.1; OTTHUMG00000161703.1; AC122710.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.3048 non-coding 
CPAT coding probability 5.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAPD7-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAPD7-1:1
3.1 lnc-PAPD7-1:1
4.0 lnc-PAPD7-2:5
4.1 lnc-PAPD7-2:5
5.0 lnc-PAPD7-2:5
5.1 lnc-CARD6-323:1
5.2 lnc-PAPD7-2:5