Transcript: lnc-PARP8-2:1

Basic information

LNCipedia transcript ID: lnc-PARP8-2:1 
LNCipedia gene ID: lnc-PARP8-2
Ensembl Gene ID: ENSG00000248918
Ensembl Transcript ID: ENST00000508923
Location (hg19): chr5:50265494-50266021
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 432 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508923; ENST00000508923.2; CTD-2089N3.3-001; OTTHUMT00000368779.2; NONHSAT101381
Alternative gene names: ENSG00000248918; CTD-2089N3.3; ENSG00000248918.2; OTTHUMG00000162410.2; AC008808.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -251.9567 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PARP8-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PARP8-2:1
3.1 lnc-PARP8-2:1
4.0 lnc-PARP8-2:1
4.1 lnc-PARP8-2:1
5.0 lnc-PARP8-2:1
5.1 lnc-GPBP1-63:2
5.2 lnc-PARP8-2:1