Transcript: lnc-PARVG-5:1

Basic information

LNCipedia transcript ID: lnc-PARVG-5:1 
LNCipedia gene ID: lnc-PARVG-5
Ensembl Gene ID: ENSG00000279175
Ensembl Transcript ID: ENST00000623440
Location (hg19): chr22:44498659-44512112
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 13454 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623440.1
Alternative gene names: ENSG00000279175.1; CTA-414D7.1; AL033543.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 33.081 non-coding 
CPAT coding probability 44.30% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PARVG-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PARVG-5:1
4.1 lnc-PARVG-5:1
5.0 lnc-PARVG-5:1
5.1 lnc-FBLN1-32:1
5.2 lnc-PARVG-5:1