Transcript: lnc-PATJ-2:2

Basic information

LNCipedia transcript ID: lnc-PATJ-2:2 
LNCipedia gene ID: lnc-PATJ-2
Ensembl Gene ID: ENSG00000270742
Ensembl Transcript ID: ENST00000603233
Location (hg19): chr1:61590405-61590874
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 470 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT003600; ENST00000603233.1
Alternative gene names: ENSG00000270742.1; RP4-802A10.1; AC096947.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.5309 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PATJ-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-INADL-2:2
4.0 lnc-INADL-2:2
4.1 lnc-INADL-2:2
5.0 lnc-INADL-2:2
5.1 lnc-USP1-15:2
5.2 lnc-PATJ-2:2