Transcript: lnc-PAWR-1:6

Basic information

LNCipedia transcript ID: lnc-PAWR-1:6 
LNCipedia gene ID: lnc-PAWR-1
Location (hg19): chr12:79786697-79849308
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1223 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000257894.1|ENST00000550268.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.2524 non-coding 
CPAT coding probability 4.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAWR-1:6 yes no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PAWR-1:6
5.0 lnc-PAWR-1:6
5.1 lnc-CCDC59-28:3
5.2 lnc-PAWR-1:6