Transcript: lnc-PAX4-1:1

Basic information

LNCipedia transcript ID: lnc-PAX4-1:1 
LNCipedia gene ID: lnc-PAX4-1
Ensembl Gene ID: ENSG00000240790
Ensembl Transcript ID: ENST00000490314
Location (hg19): chr7:127284739-127292066
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 495 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013252; ENST00000490314.1; AC073934.6-001; OTTHUMT00000349175.1; NONHSAT123153
Alternative gene names: XLOC_006596; linc-PAX4; ENSG00000240790.1; AC073934.6; OTTHUMG00000157565.1; AC073934.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.4195 non-coding 
CPAT coding probability 9.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAX4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAX4-1:1
3.1 lnc-PAX4-1:1
4.0 lnc-PAX4-1:1
4.1 lnc-PAX4-1:1
5.0 lnc-PAX4-1:1
5.1 lnc-UBE2H-32:1
5.2 lnc-PAX4-1:1