Transcript: lnc-PAX6-1:2

Basic information

LNCipedia transcript ID: lnc-PAX6-1:2 
LNCipedia gene ID: lnc-PAX6-1
Ensembl Gene ID: ENSG00000228061
Ensembl Transcript ID: ENST00000434742
Location (hg19): chr11:31749333-31789373
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 454 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434742.1; Z83001.1-001; OTTHUMT00000286643.1; NONHSAT018626
Alternative gene names: ENSG00000228061.1; Z83001.1; OTTHUMG00000142920.1; ENSG00000228061.5; AC131571.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.5689 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAX6-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAX6-1:2
4.0 lnc-PAX6-1:2
4.1 lnc-PAX6-1:2
5.0 lnc-PAX6-1:2
5.1 lnc-CSTF3-25:2
5.2 lnc-PAX6-1:2