Transcript: lnc-PAX8-1:2

Basic information

LNCipedia transcript ID: lnc-PAX8-1:2 
LNCipedia gene ID: lnc-PAX8-1
Ensembl Gene ID: ENSG00000234174
Ensembl Transcript ID: ENST00000446590
Location (hg19): chr2:113929112-113932914
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 559 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446590.1; AC016683.5-001; OTTHUMT00000330816.1; NONHSAT073747
Alternative gene names: ENSG00000234174.1; AC016683.5; OTTHUMG00000153342.1; AC016683.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.4213 non-coding 
CPAT coding probability 5.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAX8-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAX8-1:2
4.0 lnc-PAX8-1:2
4.1 lnc-PAX8-1:2
5.0 lnc-PAX8-1:2
5.1 lnc-EN1-43:2
5.2 lnc-PAX8-1:2