Transcript: lnc-PAX9-11:5

Basic information

LNCipedia transcript ID: lnc-PAX9-11:5 
LNCipedia gene ID: lnc-PAX9-11
Location (hg19): chr14:37125282-37126386
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1105 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA376:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -206.5698 non-coding 
CPAT coding probability 5.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAX9-11:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PAX9-1:2
4.1 lnc-PAX9-1:2
5.0 lnc-PAX9-1:2
5.1 lnc-BRMS1L-27:5
5.2 lnc-PAX9-11:5