Transcript: lnc-PAXIP1-3:2

Basic information

LNCipedia transcript ID: lnc-PAXIP1-3:2 
LNCipedia gene ID: lnc-PAXIP1-3
Ensembl Gene ID: ENSG00000203335
Ensembl Transcript ID: ENST00000425591
Location (hg19): chr7:153752670-153756646
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2470 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425591.1; AC006019.3-001; OTTHUMT00000322987.1; NONHSAT124313
Alternative gene names: ENSG00000203335.3; AC006019.3; OTTHUMG00000151520.1; ENSG00000203335.4; AC006019.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 95.7066 coding 
CPAT coding probability 31.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PAXIP1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAXIP1-3:2
4.0 lnc-PAXIP1-3:2
4.1 lnc-PAXIP1-3:2
5.0 lnc-PAXIP1-3:2
5.1 lnc-PAXIP1-3:2
5.2 lnc-PAXIP1-3:2