Transcript: lnc-PBX2-1:1

Basic information

LNCipedia transcript ID: lnc-PBX2-1:1 
LNCipedia gene ID: lnc-PBX2-1
Location (hg19): chr6:32152516-32153659
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 656 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000559458.1; XXbac-BPG300A18.13-001; OTTHUMT00000417697.1; NONHSAT108895
Alternative gene names: ENSG00000259382.1; XXbac-BPG300A18.13; OTTHUMG00000172292.1; ENSG00000273333.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -141.4038 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PBX2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGER-1:1
4.0 lnc-AGER-1:1
4.1 lnc-AGER-1:1
5.0 lnc-AGER-1:1
5.1 lnc-DXO-9:1
5.2 lnc-PBX2-1:1