Transcript: lnc-PCBP3-3:8

Basic information

LNCipedia transcript ID: lnc-PCBP3-3:8 
LNCipedia gene ID: lnc-PCBP3-3
Location (hg19): chr21:47170542-47172900
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 749 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000423045.1; AL133492.3-001; OTTHUMT00000206825.1; NONHSAT082988
Alternative gene names: ENSG00000231820.1; AL133492.3; OTTHUMG00000090405.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.1497 non-coding 
CPAT coding probability 7.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCBP3-3:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL6A1-3:1
4.0 lnc-PCBP3-3:8
4.1 lnc-PCBP3-3:8
5.0 lnc-PCBP3-3:8
5.1 lnc-PRMT2-27:7
5.2 lnc-PCBP3-3:8