Transcript: lnc-PCDH10-9:2

Basic information

LNCipedia transcript ID: lnc-PCDH10-9:2 
LNCipedia gene ID: lnc-PCDH10-9
Ensembl Gene ID: ENSG00000248434
Ensembl Transcript ID: ENST00000514526
Location (hg19): chr4:135988388-136018813
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 689 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007630; ENST00000514526; ENST00000514526.1; RP11-553P9.2-001; OTTHUMT00000364196.1; NONHSAT098367
Alternative gene names: XLOC_003698; linc-CCRN4L-13; ENSG00000248434; RP11-553P9.2; ENSG00000248434.1; OTTHUMG00000161217.1; AC107463.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -226.1627 non-coding 
CPAT coding probability 10.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDH10-9:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH10-7:2
3.1 lnc-PCDH10-9:2
4.0 lnc-PCDH10-9:2
4.1 lnc-PCDH10-9:2
5.0 lnc-PCDH10-9:2
5.1 lnc-NOCT-20:2
5.2 lnc-PCDH10-9:2