Transcript: lnc-PCDH18-4:1

Basic information

LNCipedia transcript ID: lnc-PCDH18-4:1 
LNCipedia gene ID: lnc-PCDH18-4
Ensembl Gene ID: ENSG00000251567
Ensembl Transcript ID: ENST00000500324
Location (hg19): chr4:137094354-137316626
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 525 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500324.2; RP11-775H9.2-002; OTTHUMT00000364262.1; NONHSAT098382
Alternative gene names: ENSG00000251567.1; RP11-775H9.2; OTTHUMG00000161242.1; ENSG00000251567.5; AC018680.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.9617 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDH18-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCDH18-4:1
4.0 lnc-PCDH18-4:1
4.1 lnc-PCDH18-4:1
5.0 lnc-PCDH18-4:1
5.1 lnc-CLGN-45:1
5.2 lnc-PCDH18-4:1