Transcript: lnc-PCDH7-6:1

Basic information

LNCipedia transcript ID: lnc-PCDH7-6:1 
LNCipedia gene ID: lnc-PCDH7-6
Location (hg19): chr4:32226645-32230134
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 605 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008034; NONHSAT095954
Alternative gene names: XLOC_003498; linc-DTHD1-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.0358 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDH7-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH7-6:1
3.1 lnc-PCDH7-6:1
4.0 lnc-PCDH7-6:1
4.1 lnc-PCDH7-6:1
5.0 lnc-PCDH7-6:1
5.1 lnc-GABRB1-106:3
5.2 lnc-PCDH7-6:1