Transcript: lnc-PCDH7-9:1

Basic information

LNCipedia transcript ID: lnc-PCDH7-9:1 
LNCipedia gene ID: lnc-PCDH7-9
Location (hg19): chr4:29119795-29120520
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 639 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008029; NONHSAT095920
Alternative gene names: XLOC_003491; linc-PCDH7-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.5376 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDH7-9:1 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH7-9:1
3.1 lnc-PCDH7-9:1
4.0 lnc-PCDH7-9:1
4.1 lnc-PCDH7-9:1
5.0 lnc-PCDH7-9:1
5.1 lnc-GABRB1-115:1
5.2 lnc-PCDH7-9:1