Transcript: lnc-PCDH9-1:1

Basic information

LNCipedia transcript ID: lnc-PCDH9-1:1 
LNCipedia gene ID: lnc-PCDH9-1
Location (hg19): chr13:66715500-66806206
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 844 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000512415; NONHSAT034205
Alternative gene names: ENSG00000250631; AL353896.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.9651 non-coding 
CPAT coding probability 2.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDH9-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH9-1:1
3.1 lnc-PCDH9-1:1
4.0 lnc-PCDH9-1:1
4.1 lnc-PCDH9-1:1
5.0 lnc-PCDH9-1:1
5.1 lnc-CCDC169-247:1
5.2 lnc-PCDH9-1:1