Transcript: lnc-PCDH9-3:1

Basic information

LNCipedia transcript ID: lnc-PCDH9-3:1 
LNCipedia gene ID: lnc-PCDH9-3
Location (hg19): chr13:65214335-65216446
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 544 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022046; NONHSAT034191
Alternative gene names: XLOC_010647; linc-PCDH20-12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.2471 non-coding 
CPAT coding probability 7.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDH9-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH9-3:1
3.1 lnc-PCDH9-3:1
4.0 lnc-PCDH9-3:1
4.1 lnc-PCDH9-3:1
5.0 lnc-PCDH9-3:1
5.1 lnc-CCDC169-242:1
5.2 lnc-PCDH9-3:1