Transcript: lnc-PCDHB4-1:1

Basic information

LNCipedia transcript ID: lnc-PCDHB4-1:1 
LNCipedia gene ID: lnc-PCDHB4-1
Ensembl Gene ID: ENSG00000272108
Ensembl Transcript ID: ENST00000606030
Location (hg19): chr5:140498262-140500347
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2086 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606030.1
Alternative gene names: ENSG00000272108.1; AC005754.8; AC244517.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.4515 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDHB4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCDHB4-1:1
4.0 lnc-PCDHB4-1:1
4.1 lnc-PCDHB4-1:1
5.0 lnc-PCDHB4-1:1
5.1 lnc-PCDHB10-3:1
5.2 lnc-PCDHB4-1:1