Transcript: lnc-PCDHGC3-1:1

Basic information

LNCipedia transcript ID: lnc-PCDHGC3-1:1 
LNCipedia gene ID: lnc-PCDHGC3-1
Ensembl Gene ID: ENSG00000273557
Ensembl Transcript ID: ENST00000622826
Location (hg19): chr5:140848032-140851095
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 335 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000622826.1
Alternative gene names: ENSG00000273557.1; CTD-2024I7.18; AC008781.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -52.9601 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDHGC3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PCDHGC3-1:1
4.1 lnc-PCDHGC3-1:1
5.0 lnc-PCDHGC3-1:1
5.1 lnc-PCDHB12-1:1
5.2 lnc-PCDHGC3-1:1