Transcript: lnc-PCED1B-5:11

Basic information

LNCipedia transcript ID: lnc-PCED1B-5:11 
LNCipedia gene ID: lnc-PCED1B-5
Location (hg19): chr12:46777467-47046362
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 3
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA289:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -126.4487 non-coding 
CPAT coding probability 3.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCED1B-5:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FAM113B-5:11
4.1 lnc-FAM113B-5:11
5.0 lnc-FAM113B-5:11
5.1 lnc-PCED1B-16:11
5.2 lnc-PCED1B-5:11