Transcript: lnc-PCSK1-1:1

Basic information

LNCipedia transcript ID: lnc-PCSK1-1:1 
LNCipedia gene ID: lnc-PCSK1-1
Ensembl Gene ID: ENSG00000249746
Ensembl Transcript ID: ENST00000502437
Location (hg19): chr5:95549050-95550779
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 652 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009731; ENST00000502437; ENST00000502437.1; RP11-254I22.3-001; OTTHUMT00000370532.1
Alternative gene names: XLOC_004933; linc-ELL2; ENSG00000249746; RP11-254I22.3; ENSG00000249746.1; OTTHUMG00000162820.1; AC099509.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.1968 non-coding 
CPAT coding probability 1.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCSK1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCSK1-1:1
3.1 lnc-PCSK1-1:1
4.0 lnc-PCSK1-1:1
4.1 lnc-PCSK1-1:1
5.0 lnc-PCSK1-1:1
5.1 lnc-ANKRD34B-206:2
5.2 lnc-PCSK1-1:1