Transcript: lnc-PDCD1-1:21

Basic information

LNCipedia transcript ID: lnc-PDCD1-1:21 
LNCipedia gene ID: lnc-PDCD1-1
Location (hg19): chr2:242835752-242843498
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1878 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00004646
Alternative gene names: XLOC_002558; linc-PDCD1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 147.8291 coding 
CPAT coding probability 56.08% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDCD1-1:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC131097.4.1-1:2
3.1 lnc-AC131097.4.1-1:2
4.0 lnc-AC131097.4.1-1:2
4.1 lnc-AC131097.4.1-1:2
5.0 lnc-AC131097.4.1-1:2
5.1 lnc-PDCD1-1:13
5.2 lnc-PDCD1-1:21