Transcript: lnc-PDE10A-1:4

Basic information

LNCipedia transcript ID: lnc-PDE10A-1:4 
LNCipedia gene ID: lnc-PDE10A-1
Location (hg19): chr6:166471807-166473129
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 747 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012359; NONHSAT116026
Alternative gene names: XLOC_005919; linc-PDE10A-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.3827 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDE10A-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-T-1:1
3.1 lnc-T-1:1
4.0 lnc-T-1:1
4.1 lnc-T-1:1
5.0 lnc-T-1:1
5.1 lnc-PRKN-36:1
5.2 lnc-PDE10A-1:4