Transcript: lnc-PDE4C-1:1

Basic information

LNCipedia transcript ID: lnc-PDE4C-1:1 
LNCipedia gene ID: lnc-PDE4C-1
Location (hg19): chr19:18313148-18314845
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 543 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000515410.1; AC068499.6-001; OTTHUMT00000268055.1
Alternative gene names: ENSG00000250638.1; AC068499.6; OTTHUMG00000137377.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -611.3987 non-coding 
CPAT coding probability 96.20% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDE4C-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RAB3A-1:1
4.0 lnc-RAB3A-1:1
4.1 lnc-RAB3A-1:1
5.0 lnc-RAB3A-1:1
5.1 lnc-PALM3-123:1
5.2 lnc-PDE4C-1:1