Transcript: lnc-PDE6B-1:8

Basic information

LNCipedia transcript ID: lnc-PDE6B-1:8 
LNCipedia gene ID: lnc-PDE6B-1
Ensembl Gene ID: ENSG00000283183
Ensembl Transcript ID: ENST00000637674
Location (hg19): chr4:570957-578655
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1854 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; NONCODE v4; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542026; NONHSAT094576; ENST00000637674.1
Alternative gene names: ENSG00000256961; AC116565.1; ENSG00000283183.1; RP11-1263C18.2; AC116565.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.73 non-coding 
CPAT coding probability 25.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDE6B-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDE6B-1:8
3.1 lnc-PDE6B-1:8
4.0 lnc-PDE6B-1:8
4.1 lnc-PDE6B-1:8
5.0 lnc-PDE6B-1:8
5.1 lnc-GPR78-137:17
5.2 lnc-PDE6B-1:8