Transcript: lnc-PDGFB-2:4

Basic information

LNCipedia transcript ID: lnc-PDGFB-2:4 
LNCipedia gene ID: lnc-PDGFB-2
Location (hg19): chr22:39713401-39715597
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 630 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT086776
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 1348.1248 coding 
CPAT coding probability 13.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDGFB-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL031590.1-2:3
4.0 lnc-AL031590.1-2:3
4.1 lnc-AL031590.1-2:3
5.0 lnc-AL031590.1-2:3
5.1 lnc-DNAJB7-20:3
5.2 lnc-PDGFB-2:4