Transcript: lnc-PDHA2-2:5

Basic information

LNCipedia transcript ID: lnc-PDHA2-2:5 
LNCipedia gene ID: lnc-PDHA2-2
Location (hg19): chr4:96470501-96471646
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1146 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000271474.1|FTMT21600005261.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -127.3596 non-coding 
CPAT coding probability 5.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDHA2-2:5 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PDHA2-2:5
5.0 lnc-PDHA2-2:5
5.1 lnc-ATOH1-9:5
5.2 lnc-PDHA2-2:5