Transcript: lnc-PDSS2-1:1

Basic information

LNCipedia transcript ID: lnc-PDSS2-1:1 
LNCipedia gene ID: lnc-PDSS2-1
Ensembl Gene ID: ENSG00000234206
Ensembl Transcript ID: ENST00000437040
Location (hg19): chr6:107831007-107832925
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 329 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437040.1; RP1-67A8.3-002; OTTHUMT00000041689.1; NONHSAT114307
Alternative gene names: ENSG00000234206.1; RP1-67A8.3; OTTHUMG00000015310.1; ENSG00000234206.5; AL121957.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.826 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDSS2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDSS2-1:1
4.0 lnc-PDSS2-1:1
4.1 lnc-PDSS2-1:1
5.0 lnc-PDSS2-1:1
5.1 lnc-SNX3-13:1
5.2 lnc-PDSS2-1:1