Transcript: lnc-PDZD7-11:2

Basic information

LNCipedia transcript ID: lnc-PDZD7-11:2 
LNCipedia gene ID: lnc-PDZD7-11
Location (hg19): chr10:102826264-102827431
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1065 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000273162.1|MICT00000047497.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -232.6596 non-coding 
CPAT coding probability 9.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDZD7-11:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PDZD7-11:2
5.0 lnc-PDZD7-11:2
5.1 lnc-CPN1-41:2
5.2 lnc-PDZD7-11:2