Transcript: lnc-PENK-3:1

Basic information

LNCipedia transcript ID: lnc-PENK-3:1 
LNCipedia gene ID: lnc-PENK-3
Ensembl Gene ID: ENSG00000254055
Ensembl Transcript ID: ENST00000521215
Location (hg19): chr8:57552460-57569024
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 584 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521215; ENST00000521215.1; RP11-17A4.4-001; OTTHUMT00000378664.1; NONHSAT126718
Alternative gene names: ENSG00000254055; RP11-17A4.4; ENSG00000254055.1; OTTHUMG00000164414.1; AC009597.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.4621 non-coding 
CPAT coding probability 5.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PENK-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PENK-3:1
3.1 lnc-PENK-3:1
4.0 lnc-PENK-3:1
4.1 lnc-PENK-3:1
5.0 lnc-PENK-3:1
5.1 lnc-IMPAD1-3:1
5.2 lnc-PENK-3:1