Transcript: lnc-PER2-1:1

Basic information

LNCipedia transcript ID: lnc-PER2-1:1 
LNCipedia gene ID: lnc-PER2-1
Location (hg19): chr2:239207351-239209261
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 563 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: TCONS_00003519; ENST00000437372.1; AC012485.2-001; OTTHUMT00000328354.1; NONHSAT077712
Alternative gene names: XLOC_002536; linc-PER2-1; ENSG00000232306.1; AC012485.2; OTTHUMG00000152883.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.9613 non-coding 
CPAT coding probability 4.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PER2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PER2-1:1
3.1 lnc-PER2-1:1
4.0 lnc-PER2-1:1
4.1 lnc-PER2-1:1
5.0 lnc-PER2-1:1
5.1 lnc-ASB18-34:1
5.2 lnc-PER2-1:1