Transcript: lnc-PEX6-3:2

Basic information

LNCipedia transcript ID: lnc-PEX6-3:2 
LNCipedia gene ID: lnc-PEX6-3
Location (hg19): chr6:42895807-42897167
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1361 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000088328.1|FTMT22200003472.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -11.5474 non-coding 
CPAT coding probability 3.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PEX6-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PEX6-3:2
5.0 lnc-PEX6-3:2
5.1 lnc-NFKBIE-38:2
5.2 lnc-PEX6-3:2