Transcript: lnc-PFKFB3-13:3

Basic information

LNCipedia transcript ID: lnc-PFKFB3-13:3 
LNCipedia gene ID: lnc-PFKFB3-13
Location (hg19): chr10:6534431-6538179
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3749 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000104458.1|ENCT00000043362.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -50.5078 non-coding 
CPAT coding probability 3.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PFKFB3-13:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AL137145.1-13:3
5.0 lnc-AL137145.1-13:3
5.1 lnc-NPY4R2-448:3
5.2 lnc-PFKFB3-13:3