Transcript: lnc-PFKP-14:1

Basic information

LNCipedia transcript ID: lnc-PFKP-14:1 
LNCipedia gene ID: lnc-PFKP-14
Ensembl Gene ID: ENSG00000230573
Ensembl Transcript ID: ENST00000413339
RefSeq ID: NR_134490
Location (hg19): chr10:3876142-3876920
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 536 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017770; ENST00000413339; ENST00000413339.1; RP11-464C19.2-001; OTTHUMT00000046501.1; NONHSAT011056; NR_134490.1
Alternative gene names: XLOC_008355; linc-AKR1E2-8; ENSG00000230573; RP11-464C19.2; ENSG00000230573.1; OTTHUMG00000017568.1; AL513303.2; LOC105376365


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -299.568 non-coding 
CPAT coding probability 4.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PFKP-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PFKP-13:1
3.1 lnc-PFKP-14:1
4.0 lnc-PFKP-14:1
4.1 lnc-PFKP-14:1
5.0 lnc-PFKP-14:1
5.1 lnc-NPY4R2-508:1
5.2 lnc-PFKP-14:1