Transcript: lnc-PFKP-2:1

Basic information

LNCipedia transcript ID: lnc-PFKP-2:1 
LNCipedia gene ID: lnc-PFKP-2
Ensembl Gene ID: ENSG00000234182
Ensembl Transcript ID: ENST00000439575
Location (hg19): chr10:3052723-3055303
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 608 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017763; ENST00000439575; ENST00000439575.1; RP11-118K6.2-001; OTTHUMT00000046450.1; NONHSAT010994
Alternative gene names: XLOC_008344; linc-PFKP-1; ENSG00000234182; RP11-118K6.2; ENSG00000234182.1; OTTHUMG00000017554.1; AL731533.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.8913 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PFKP-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PFKP-1:1
3.1 lnc-PFKP-2:1
4.0 lnc-PFKP-2:1
4.1 lnc-PFKP-2:1
5.0 lnc-PFKP-2:1
5.1 lnc-NPY4R2-532:1
5.2 lnc-PFKP-2:1