Transcript: lnc-PGAM1-3:1

Basic information

LNCipedia transcript ID: lnc-PGAM1-3:1 
LNCipedia gene ID: lnc-PGAM1-3
Location (hg19): chr10:99163546-99169317
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 427 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_355_chr10:99163545-99169317_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.014 non-coding 
CPAT coding probability 3.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGAM1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PGAM1-3:1
4.0 lnc-PGAM1-3:1
4.1 lnc-PGAM1-3:1
5.0 lnc-PGAM1-3:1
5.1 lnc-SMC3-187:1
5.2 lnc-PGAM1-3:1